Transcript: lnc-SDK2-3:2

Basic information

LNCipedia transcript ID: lnc-SDK2-3:2 
LNCipedia gene ID: lnc-SDK2-3
Ensembl Gene ID: ENSG00000265927
Ensembl Transcript ID: ENST00000580776
Location (hg38): chr17:73834767-73835979
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580776.1; CTD-2532D12.5-002; OTTHUMT00000442527.1; NONHSAT055746
Alternative gene names: ENSG00000265927.1; CTD-2532D12.5; OTTHUMG00000178574.1; AC125421.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -509.7919 non-coding 
CPAT coding probability 4.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SDK2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SDK2-3:2
4.0 lnc-SDK2-3:2
4.1 lnc-SDK2-3:2
5.0 lnc-SDK2-3:2
5.1 lnc-GRB2-38:2
5.2 lnc-SDK2-3:2