Transcript: lnc-SDR42E1-4:1

Basic information

LNCipedia transcript ID: lnc-SDR42E1-4:1 
LNCipedia gene ID: lnc-SDR42E1-4
Location (hg38): chr16:81704698-81711759
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2982 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000030057.1|ENCT00000168963.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -44.3229 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SDR42E1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SDR42E1-4:1
5.0 lnc-SDR42E1-4:1
5.1 lnc-MAF-26:1
5.2 lnc-SDR42E1-4:1