Transcript: lnc-SDSL-6:3

Basic information

LNCipedia transcript ID: lnc-SDSL-6:3 
LNCipedia gene ID: lnc-SDSL-6
Ensembl Gene ID: ENSG00000257997
Ensembl Transcript ID: ENST00000549266
Location (hg38): chr12:114080381-114113489
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 219 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549266; ENST00000549266.1; RP11-100F15.2-002; OTTHUMT00000404250.1; NONHSAT030871; ENST00000549266.5
Alternative gene names: ENSG00000257997; RP11-100F15.2; ENSG00000257997.1; OTTHUMG00000169477.1; ENSG00000257997.5; AC010183.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.0875 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SDSL-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SDSL-4:3
3.1 lnc-SDSL-6:3
4.0 lnc-SDSL-6:3
4.1 lnc-SDSL-6:3
5.0 lnc-SDSL-6:3
5.1 lnc-PLBD2-11:8
5.2 lnc-SDSL-6:3