Transcript: lnc-SEC16B-2:1

Basic information

LNCipedia transcript ID: lnc-SEC16B-2:1 
LNCipedia gene ID: lnc-SEC16B-2
Ensembl Gene ID: ENSG00000254154
Ensembl Transcript ID: ENST00000464428
Location (hg38): chr1:177928791-178038007
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5890 bp
Exons: 27
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000464428.2; SEC16B-001; OTTHUMT00000393729.1
Alternative gene names: ENSG00000254154.3; SEC16B; OTTHUMG00000035027.10; ENSG00000254154.4; RP4-798P15.3; ENSG00000254154.8; AL359075.2; CRYZL2P-SEC16B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4136.582 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SEC16B-2:1 yes no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC16B.1-2:1
4.0 lnc-SEC16B.1-2:1
4.1 lnc-SEC16B.1-2:1
5.0 lnc-SEC16B.1-2:1
5.1 lnc-SH2D1B-154:1
5.2 lnc-SEC16B-2:1