Transcript: lnc-SEC16B-2:11

Basic information

LNCipedia transcript ID: lnc-SEC16B-2:11 
LNCipedia gene ID: lnc-SEC16B-2
Location (hg38): chr1:178024664-178033053
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 394 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT007805
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 184.613 coding 
CPAT coding probability 20.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SEC16B-2:11 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC16B.1-2:14
4.0 lnc-SEC16B.1-2:14
4.1 lnc-SEC16B.1-2:14
5.0 lnc-SEC16B.1-2:14
5.1 lnc-SH2D1B-154:11
5.2 lnc-SEC16B-2:11