Transcript: lnc-SEC16B-2:17

Basic information

LNCipedia transcript ID: lnc-SEC16B-2:17 
LNCipedia gene ID: lnc-SEC16B-2
Ensembl Gene ID: ENSG00000254154
Ensembl Transcript ID: ENST00000354921
Location (hg38): chr1:177928788-178022544
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4998 bp
Exons: 31
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000354921.3; ENST00000354921.7
Alternative gene names: ENSG00000254154.4; RP4-798P15.3; ENSG00000254154.8; AL359075.2; CRYZL2P-SEC16B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4863.5988 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SEC16B-2:17 yes no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC16B.1-2:18
4.0 lnc-SEC16B.1-2:18
4.1 lnc-SEC16B.1-2:18
5.0 lnc-SEC16B.1-2:18
5.1 lnc-SH2D1B-154:17
5.2 lnc-SEC16B-2:17