Transcript: lnc-SEC16B-2:18

Basic information

LNCipedia transcript ID: lnc-SEC16B-2:18 
LNCipedia gene ID: lnc-SEC16B-2
Location (hg38): chr1:177929858-177984303
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3277 bp
Exons: 25
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000528461.1; SEC16B-004; OTTHUMT00000393730.1
Alternative gene names: ENSG00000254154.3; SEC16B; OTTHUMG00000035027.10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3940.8814 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SEC16B-2:18 yes no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC16B.1-2:4
4.0 lnc-SEC16B.1-2:4
4.1 lnc-SEC16B.1-2:4
5.0 lnc-SEC16B.1-2:4
5.1 lnc-SH2D1B-154:18
5.2 lnc-SEC16B-2:18