Transcript: lnc-SEC16B-2:20

Basic information

LNCipedia transcript ID: lnc-SEC16B-2:20 
LNCipedia gene ID: lnc-SEC16B-2
Location (hg38): chr1:177923956-177928485
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 811 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000441371.1; RP4-798P15.2-001; OTTHUMT00000098152.1; NONHSAT007797
Alternative gene names: ENSG00000233715.1; RP4-798P15.2; OTTHUMG00000040860.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.9346 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC16B-2:20 yes no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC16B.1-1:1
4.0 lnc-SEC16B.1-2:20
4.1 lnc-SEC16B.1-2:20
5.0 lnc-SEC16B.1-2:20
5.1 lnc-SH2D1B-154:20
5.2 lnc-SEC16B-2:20