Transcript: lnc-SEC16B-2:4

Basic information

LNCipedia transcript ID: lnc-SEC16B-2:4 
LNCipedia gene ID: lnc-SEC16B-2
Location (hg38): chr1:178025931-178037932
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 374 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT007808
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.332 non-coding 
CPAT coding probability 3.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC16B-2:4 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC16B.1-2:7
4.0 lnc-SEC16B.1-2:7
4.1 lnc-SEC16B.1-2:7
5.0 lnc-SEC16B.1-2:7
5.1 lnc-SH2D1B-154:4
5.2 lnc-SEC16B-2:4