Transcript: lnc-SEC16B-2:5

Basic information

LNCipedia transcript ID: lnc-SEC16B-2:5 
LNCipedia gene ID: lnc-SEC16B-2
Location (hg38): chr1:178035274-178037924
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2556 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT007811
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.7369 non-coding 
CPAT coding probability 1.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC16B-2:5 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC16B.1-2:8
4.0 lnc-SEC16B.1-2:8
4.1 lnc-SEC16B.1-2:8
5.0 lnc-SEC16B.1-2:8
5.1 lnc-SH2D1B-154:5
5.2 lnc-SEC16B-2:5