Transcript: lnc-SEC16B-2:6

Basic information

LNCipedia transcript ID: lnc-SEC16B-2:6 
LNCipedia gene ID: lnc-SEC16B-2
Location (hg38): chr1:178025700-178037849
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 617 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT007807
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.2407 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC16B-2:6 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC16B.1-2:9
4.0 lnc-SEC16B.1-2:9
4.1 lnc-SEC16B.1-2:9
5.0 lnc-SEC16B.1-2:9
5.1 lnc-SH2D1B-154:6
5.2 lnc-SEC16B-2:6