Transcript: lnc-SEC22C-2:2

Basic information

LNCipedia transcript ID: lnc-SEC22C-2:2 
LNCipedia gene ID: lnc-SEC22C-2
Ensembl Gene ID: ENSG00000230084
Ensembl Transcript ID: ENST00000438017
Location (hg38): chr3:42601963-42654388
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 722 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438017.1; RP4-613B23.1-003; OTTHUMT00000343489.1; NONHSAT089243; ENST00000438017.5
Alternative gene names: ENSG00000230084.1; RP4-613B23.1; OTTHUMG00000156209.1; ENSG00000230084.5; AC006059.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.2112 non-coding 
CPAT coding probability 2.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC22C-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC22C-2:2
4.0 lnc-SEC22C-2:2
4.1 lnc-SEC22C-2:2
5.0 lnc-SEC22C-2:2
5.1 lnc-SEC22C-2:2
5.2 lnc-SEC22C-2:2