Transcript: lnc-SEC22C-3:1

Basic information

LNCipedia transcript ID: lnc-SEC22C-3:1 
LNCipedia gene ID: lnc-SEC22C-3
Location (hg38): chr3:42527403-42527701
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 299 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr3_2507_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -251.4436 non-coding 
CPAT coding probability 64.31% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SEC22C-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC22C-3:1
4.0 lnc-SEC22C-3:1
4.1 lnc-SEC22C-3:1
5.0 lnc-SEC22C-3:1
5.1 lnc-SEC22C-3:1
5.2 lnc-SEC22C-3:1