Transcript: lnc-SEC24C-5:4

Basic information

LNCipedia transcript ID: lnc-SEC24C-5:4 
LNCipedia gene ID: lnc-SEC24C-5
Ensembl Gene ID: ENSG00000272791
Ensembl Transcript ID: ENST00000609434
Location (hg38): chr10:73630556-73631490
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 935 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609434.1
Alternative gene names: ENSG00000272791.1; RP11-464F9.22; AC073389.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.46 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEC24C-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC24C-5:4
4.0 lnc-SEC24C-5:4
4.1 lnc-SEC24C-5:4
5.0 lnc-SEC24C-5:4
5.1 lnc-MTRNR2L5-165:7
5.2 lnc-SEC24C-5:4