Transcript: lnc-SELENOF-2:10

Basic information

LNCipedia transcript ID: lnc-SELENOF-2:10 
LNCipedia gene ID: lnc-SELENOF-2
Ensembl Gene ID: ENSG00000261737
Ensembl Transcript ID: ENST00000565575
Location (hg38): chr1:86703502-86704462
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 961 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565575.1; RP4-612B15.3-001; OTTHUMT00000431197.1; NONHSAT004273
Alternative gene names: ENSG00000261737.1; RP4-612B15.3; OTTHUMG00000175864.1; AL049597.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.9933 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SELENOF-2:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP4-604K5.1.1-2:1
4.0 lnc-RP4-604K5.1.1-2:1
4.1 lnc-RP4-604K5.1.1-2:1
5.0 lnc-RP4-604K5.1.1-2:1
5.1 lnc-RBMXL1-27:10
5.2 lnc-SELENOF-2:10