Transcript: lnc-SEMA3B-1:5

Basic information

LNCipedia transcript ID: lnc-SEMA3B-1:5 
LNCipedia gene ID: lnc-SEMA3B-1
Ensembl Gene ID: ENSG00000230454
Ensembl Transcript ID: ENST00000426302
Location (hg38): chr3:50261233-50263312
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 430 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426302; ENST00000426302.1; U73166.2-002; OTTHUMT00000346669.1; NONHSAT089810
Alternative gene names: ENSG00000230454; U73166.2; ENSG00000230454.1; OTTHUMG00000156937.1; U73166.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.487 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEMA3B-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GNAI2-1:3
3.1 lnc-GNAI2-1:3
4.0 lnc-GNAI2-1:3
4.1 lnc-C3orf45-1:7
5.0 lnc-C3orf45-1:7
5.1 lnc-GNAI2-1:29
5.2 lnc-SEMA3B-1:5