Transcript: lnc-SEMA3D-1:1

Basic information

LNCipedia transcript ID: lnc-SEMA3D-1:1 
LNCipedia gene ID: lnc-SEMA3D-1
Ensembl Gene ID: ENSG00000232019
Ensembl Transcript ID: ENST00000439105
Location (hg38): chr7:84939349-84940245
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 782 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439105; ENST00000439105.1; AC074183.4-001; OTTHUMT00000336375.1; NONHSAT121795
Alternative gene names: ENSG00000232019; AC074183.4; ENSG00000232019.1; OTTHUMG00000154628.1; AC074183.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 86.9824 coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SEMA3D-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEMA3D-1:1
3.1 lnc-SEMA3D-1:1
4.0 lnc-SEMA3D-1:1
4.1 lnc-SEMA3D-1:1
5.0 lnc-SEMA3D-1:1
5.1 lnc-HGF-21:1
5.2 lnc-SEMA3D-1:1