Transcript: lnc-SEMA6A-1:2

Basic information

LNCipedia transcript ID: lnc-SEMA6A-1:2 
LNCipedia gene ID: lnc-SEMA6A-1
RefSeq ID: NR_104675
Location (hg38): chr5:116367416-116374570
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3258 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT103361; NR_104675; NR_104675.1
Alternative gene names: LOC101927190


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.2559 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEMA6A-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEMA6A-1:2
4.0 lnc-SEMA6A-1:2
4.1 lnc-SEMA6A-1:2
5.0 lnc-SEMA6A-1:2
5.1 lnc-LOX-88:2
5.2 lnc-SEMA6A-1:2