Transcript: lnc-SEMA6A-4:1

Basic information

LNCipedia transcript ID: lnc-SEMA6A-4:1 
LNCipedia gene ID: lnc-SEMA6A-4
Ensembl Gene ID: ENSG00000249150
Ensembl Transcript ID: ENST00000508636
Location (hg38): chr5:116820993-116830187
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009758; ENST00000508636; ENST00000508636.1; CTC-472C24.1-001; OTTHUMT00000370937.1; NONHSAT103379
Alternative gene names: XLOC_004963; linc-SEMA6A-1; ENSG00000249150; CTC-472C24.1; ENSG00000249150.1; OTTHUMG00000162884.1; AC010267.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.6923 non-coding 
CPAT coding probability 4.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEMA6A-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEMA6A-4:1
3.1 lnc-SEMA6A-4:1
4.0 lnc-SEMA6A-4:1
4.1 lnc-SEMA6A-4:1
5.0 lnc-SEMA6A-4:1
5.1 lnc-LOX-79:1
5.2 lnc-SEMA6A-4:1