Transcript: lnc-SENP6-2:13

Basic information

LNCipedia transcript ID: lnc-SENP6-2:13 
LNCipedia gene ID: lnc-SENP6-2
Ensembl Gene ID: ENSG00000238156
Ensembl Transcript ID: ENST00000455530
Location (hg38): chr6:75454944-75458900
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 461 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455530; ENST00000455530.1; RP11-415D17.4-001; OTTHUMT00000041262.1; NONHSAT113616
Alternative gene names: ENSG00000238156; RP11-415D17.4; ENSG00000238156.1; OTTHUMG00000015055.1; AL445465.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -273.2767 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SENP6-2:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SENP6-1:1
3.1 lnc-SENP6-1:1
4.0 lnc-SENP6-2:13
4.1 lnc-SENP6-2:13
5.0 lnc-SENP6-2:13
5.1 lnc-CYB5R4-75:14
5.2 lnc-SENP6-2:13