Transcript: lnc-SENP6-2:3

Basic information

LNCipedia transcript ID: lnc-SENP6-2:3 
LNCipedia gene ID: lnc-SENP6-2
Ensembl Gene ID: ENSG00000237174
Ensembl Transcript ID: ENST00000419709
Location (hg38): chr6:75360849-75386380
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 506 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419709.1; RP11-415D17.3-001; OTTHUMT00000041259.1; NONHSAT113612
Alternative gene names: ENSG00000237174.1; RP11-415D17.3; OTTHUMG00000015054.1; ENSG00000237174.3; ENSG00000237174.7; AL445465.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.7463 non-coding 
CPAT coding probability 9.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SENP6-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SENP6-2:3
4.0 lnc-SENP6-2:3
4.1 lnc-SENP6-2:3
5.0 lnc-SENP6-2:3
5.1 lnc-CYB5R4-75:10
5.2 lnc-SENP6-2:3