Transcript: lnc-SEPT7-3:3

Basic information

LNCipedia transcript ID: lnc-SEPT7-3:3 
LNCipedia gene ID: lnc-SEPT7-3
Ensembl Gene ID: ENSG00000271122
Ensembl Transcript ID: ENST00000605778
Location (hg38): chr7:35695214-35699413
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4200 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000605778.1
Alternative gene names: ENSG00000271122.1; RP11-379H18.1; AC018647.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.7245 non-coding 
CPAT coding probability 3.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEPT7-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEPT7-3:3
4.0 lnc-SEPT7-3:3
4.1 lnc-SEPT7-3:3
5.0 lnc-SEPT7-3:3
5.1 lnc-CCDC129-43:5
5.2 lnc-SEPT7-3:3