Transcript: lnc-SEPT9-3:2

Basic information

LNCipedia transcript ID: lnc-SEPT9-3:2 
LNCipedia gene ID: lnc-SEPT9-3
Location (hg38): chr17:77547003-77568690
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 8111 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025504; NONHSAT056162
Alternative gene names: XLOC_012317; linc-TNRC6C-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.1513 non-coding 
CPAT coding probability 6.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEPT9-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEPT9-3:2
3.1 lnc-SEPT9-3:2
4.0 lnc-SEPT9-3:2
4.1 lnc-SEPT9-3:2
5.0 lnc-SEPT9-3:2
5.1 lnc-ZACN-32:10
5.2 lnc-SEPT9-3:2