Transcript: lnc-SEPT9-3:3

Basic information

LNCipedia transcript ID: lnc-SEPT9-3:3 
LNCipedia gene ID: lnc-SEPT9-3
Location (hg38): chr17:77548031-77560589
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 248 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025505; NONHSAT056163
Alternative gene names: XLOC_012317; linc-TNRC6C-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 2.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEPT9-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEPT9-3:3
3.1 lnc-SEPT9-3:3
4.0 lnc-SEPT9-3:3
4.1 lnc-SEPT9-3:3
5.0 lnc-SEPT9-3:3
5.1 lnc-ZACN-32:11
5.2 lnc-SEPT9-3:3