Transcript: lnc-SEPT9-4:1

Basic information

LNCipedia transcript ID: lnc-SEPT9-4:1 
LNCipedia gene ID: lnc-SEPT9-4
Location (hg38): chr17:77667090-77667726
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 366 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025508; NONHSAT056169
Alternative gene names: XLOC_012318; linc-TNRC6C-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.8299 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEPT9-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEPT9-4:1
3.1 lnc-SEPT9-4:1
4.0 lnc-SEPT9-4:1
4.1 lnc-SEPT9-4:1
5.0 lnc-SEPT9-4:1
5.1 lnc-ZACN-33:1
5.2 lnc-SEPT9-4:1