Transcript: lnc-SERAC1-3:2

Basic information

LNCipedia transcript ID: lnc-SERAC1-3:2 
LNCipedia gene ID: lnc-SERAC1-3
Ensembl Gene ID: ENSG00000229502
Ensembl Transcript ID: ENST00000422776
Location (hg38): chr6:157872571-157875210
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 743 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422776.1; RP11-52J3.2-002; OTTHUMT00000042846.1; NONHSAT115723; ENST00000422776.5
Alternative gene names: ENSG00000229502.1; RP11-52J3.2; OTTHUMG00000015897.1; ENSG00000229502.5; AL391863.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -235.4465 non-coding 
CPAT coding probability 6.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERAC1-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SERAC1-3:2
4.0 lnc-SERAC1-3:2
4.1 lnc-SERAC1-3:2
5.0 lnc-SERAC1-3:2
5.1 lnc-DYNLT1-6:2
5.2 lnc-SERAC1-3:2