Transcript: lnc-SERPINB6-2:3

Basic information

LNCipedia transcript ID: lnc-SERPINB6-2:3 
LNCipedia gene ID: lnc-SERPINB6-2
Location (hg38): chr6:3051101-3052083
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 272 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011430; ENST00000423062.1; RP1-40E16.3-002; OTTHUMT00000039667.1; NONHSAT106945
Alternative gene names: XLOC_005582; linc-SERPINB6-2; ENSG00000233763.1; RP1-40E16.3; OTTHUMG00000014138.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 11.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERPINB6-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SERPINB6-1:3
3.1 lnc-SERPINB6-2:3
4.0 lnc-SERPINB6-2:3
4.1 lnc-SERPINB6-2:3
5.0 lnc-SERPINB6-2:3
5.1 lnc-ECI2-82:5
5.2 lnc-SERPINB6-2:3