Transcript: lnc-SERPINI1-23:17

Basic information

LNCipedia transcript ID: lnc-SERPINI1-23:17 
LNCipedia gene ID: lnc-SERPINI1-23
Location (hg38): chr3:167903398-167922642
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 490 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: TCONS_00005650; ENST00000469060; ENST00000469060.1; RP11-298O21.5-005; OTTHUMT00000351303.1; NONHSAT093117; ENST00000469060.5
Alternative gene names: XLOC_002909; linc-MYNN-5; ENSG00000244227; RP11-298O21.5; ENSG00000244227.1; OTTHUMG00000158503.2; ENSG00000244227.5; LINC01330;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.2529 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERPINI1-23:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SERPINI1-4:6
3.1 lnc-SERPINI1-4:6
4.0 LINC01330:9
4.1 LINC01330:9
5.0 LINC01330:9
5.1 lnc-LRRIQ4-37:17
5.2 lnc-SERPINI1-23:17