Transcript: lnc-SERTAD2-3:11

Basic information

LNCipedia transcript ID: lnc-SERTAD2-3:11 
LNCipedia gene ID: lnc-SERTAD2-3
Location (hg38): chr2:64762118-64863626
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 910 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000234572.1|FTMT20500012143.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -108.3708 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERTAD2-3:11 no no no no

Available literature

  1. Martini (2017), lncRNAs as Novel Indicators of Patients' Prognosis in Stage I Epithelial Ovarian Cancer: A Retrospective and Multicentric Study., Clin. Cancer Res.
  2. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SERTAD2-3:11
5.0 lnc-SERTAD2-3:11
5.1 lnc-GKN2-95:10
5.2 lnc-SERTAD2-3:11

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