Transcript: lnc-SERTAD2-3:2

Basic information

LNCipedia transcript ID: lnc-SERTAD2-3:2 
LNCipedia gene ID: lnc-SERTAD2-3
Location (hg38): chr2:64969802-64970787
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 675 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004286; NONHSAT071146
Alternative gene names: XLOC_002131; linc-SERTAD2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 31.1097 non-coding 
CPAT coding probability 13.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERTAD2-3:2 no no no no

Available literature

  1. Martini (2017), lncRNAs as Novel Indicators of Patients' Prognosis in Stage I Epithelial Ovarian Cancer: A Retrospective and Multicentric Study., Clin. Cancer Res.
  2. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAB1A-3:1
3.1 lnc-RAB1A-3:1
4.0 lnc-SERTAD2-3:2
4.1 lnc-SERTAD2-3:2
5.0 lnc-SERTAD2-3:2
5.1 lnc-GKN2-95:1
5.2 lnc-SERTAD2-3:2