Transcript: lnc-SERTAD2-3:8

Basic information

LNCipedia transcript ID: lnc-SERTAD2-3:8 
HGNC Gene Symbol: lnc-SERTAD2-3    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1800
Ensembl Gene ID: ENSG00000234572
Ensembl Transcript ID: ENST00000445865
Location (hg38): chr2:64846130-64863626
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1977 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002754; ENST00000445865; ENST00000445865.1; AC007880.1-001; OTTHUMT00000327469.1; NONHSAT071135
Alternative gene names: XLOC_002129; linc-SERTAD2-5; ENSG00000234572; AC007880.1; ENSG00000234572.1; OTTHUMG00000152703.1; LINC01800


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.3708 non-coding 
CPAT coding probability 4.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERTAD2-3:8 no no no no

Available literature

  1. Martini (2017), lncRNAs as Novel Indicators of Patients' Prognosis in Stage I Epithelial Ovarian Cancer: A Retrospective and Multicentric Study., Clin. Cancer Res.
  2. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SERTAD2-2:1
3.1 lnc-SERTAD2-2:1
4.0 lnc-SERTAD2-2:1
4.1 lnc-SERTAD2-3:8
5.0 lnc-SERTAD2-3:8
5.1 lnc-GKN2-95:8
5.2 lnc-SERTAD2-3:8