Transcript: lnc-SETD4-5:1

Basic information

LNCipedia transcript ID: lnc-SETD4-5:1 
LNCipedia gene ID: lnc-SETD4-5
Ensembl Gene ID: ENSG00000230794
Ensembl Transcript ID: ENST00000412240
Location (hg38): chr21:35713139-35732942
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 349 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412240.1; AF015720.3-001; OTTHUMT00000194412.1; NONHSAT081916
Alternative gene names: ENSG00000230794.1; AF015720.3; OTTHUMG00000086462.1; AF015720.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.1222 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SETD4-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SETD4-5:1
4.0 lnc-SETD4-5:1
4.1 lnc-SETD4-5:1
5.0 lnc-SETD4-5:1
5.1 lnc-CRYZL1-24:1
5.2 lnc-SETD4-5:1