Transcript: lnc-SETD7-2:1

Basic information

LNCipedia transcript ID: lnc-SETD7-2:1 
LNCipedia gene ID: lnc-SETD7-2
Location (hg38): chr4:139618139-139623232
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1095 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00007858
Alternative gene names: XLOC_004100; linc-SETD7-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.8569 non-coding 
CPAT coding probability 4.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SETD7-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SETD7-2:1
3.1 lnc-SETD7-2:1
4.0 lnc-SETD7-2:1
4.1 lnc-SETD7-2:1
5.0 lnc-SETD7-2:1
5.1 lnc-CLGN-13:3
5.2 lnc-SETD7-2:1