Transcript: lnc-SETD7-3:5

Basic information

LNCipedia transcript ID: lnc-SETD7-3:5 
LNCipedia gene ID: lnc-SETD7-3
Ensembl Gene ID: ENSG00000273247
Ensembl Transcript ID: ENST00000608663
Location (hg38): chr4:139413816-139453776
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 431 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608663.1; ENST00000608663.5
Alternative gene names: ENSG00000273247.1; RP11-83A24.2; ENSG00000273247.5; AC097376.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.2126 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SETD7-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SETD7-3:5
4.0 lnc-SETD7-3:5
4.1 lnc-SETD7-3:5
5.0 lnc-SETD7-3:5
5.1 lnc-CLGN-17:12
5.2 lnc-SETD7-3:5