Transcript: lnc-SETDB1-1:2

Basic information

LNCipedia transcript ID: lnc-SETDB1-1:2 
LNCipedia gene ID: lnc-SETDB1-1
Location (hg38): chr1:150965260-150965963
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 616 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000560481.1; RP11-316M1.12-002; OTTHUMT00000419191.1; NONHSAT006341
Alternative gene names: ENSG00000259357.1; RP11-316M1.12; OTTHUMG00000172567.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.4308 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SETDB1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SETDB1-1:2
4.0 lnc-SETDB1-1:2
4.1 lnc-SETDB1-1:2
5.0 lnc-SETDB1-1:2
5.1 lnc-SETDB1-1:2
5.2 lnc-SETDB1-1:2