Transcript: lnc-SF1-2:1

Basic information

LNCipedia transcript ID: lnc-SF1-2:1 
LNCipedia gene ID: lnc-SF1-2
Location (hg38): chr11:64784921-64785620
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 700 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT022025; ENST00000598393.1
Alternative gene names: ENSG00000269290.1; RP11-869B15.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.4669 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SF1-2:1 yes no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP4K2-2:1
4.0 lnc-MAP4K2-2:1
4.1 lnc-MAP4K2-2:1
5.0 lnc-MAP4K2-2:1
5.1 lnc-LTBP3-66:1
5.2 lnc-SF1-2:1