Transcript: lnc-SFMBT2-1:1

Basic information

LNCipedia transcript ID: lnc-SFMBT2-1:1 
LNCipedia gene ID: lnc-SFMBT2-1
Ensembl Gene ID: ENSG00000232591
Ensembl Transcript ID: ENST00000420395
Location (hg38): chr10:7445558-7471942
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017921; ENST00000420395; ENST00000420395.1; RP5-1031D4.2-001; OTTHUMT00000046676.1; NONHSAT011282
Alternative gene names: XLOC_008722; linc-SFMBT2; ENSG00000232591; RP5-1031D4.2; ENSG00000232591.1; OTTHUMG00000017631.1; AL139125.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.2176 non-coding 
CPAT coding probability 12.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SFMBT2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SFMBT2-1:1
3.1 lnc-SFMBT2-1:1
4.0 lnc-SFMBT2-1:1
4.1 lnc-SFMBT2-1:1
5.0 lnc-SFMBT2-1:1
5.1 lnc-KLF6-110:1
5.2 lnc-SFMBT2-1:1