Transcript: lnc-SFTPA2-1:7

Basic information

LNCipedia transcript ID: lnc-SFTPA2-1:7 
LNCipedia gene ID: lnc-SFTPA2-1
RefSeq ID: NR_136624
Location (hg38): chr10:79506370-79510982
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1654 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_136624.1
Alternative gene names: LOC729815


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -53.29 non-coding 
CPAT coding probability 99.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SFTPA2-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-VSIR-94:3
5.1 lnc-VSIR-94:3
5.2 lnc-SFTPA2-1:7