Transcript: lnc-SFTPC-2:8

Basic information

LNCipedia transcript ID: lnc-SFTPC-2:8 
LNCipedia gene ID: lnc-SFTPC-2
Ensembl Gene ID: ENSG00000177725
Ensembl Transcript ID: ENST00000619681
Location (hg38): chr8:22169338-22171708
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2371 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000619681.1
Alternative gene names: ENSG00000177725.5; CTD-2530N21.5; AC105206.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -55.1175 non-coding 
CPAT coding probability 18.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SFTPC-2:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SFTPC-2:8
4.1 lnc-SFTPC-2:8
5.0 lnc-SFTPC-2:8
5.1 lnc-RHOBTB2-35:3
5.2 lnc-SFTPC-2:8