Transcript: lnc-SGCG-7:1

Basic information

LNCipedia transcript ID: lnc-SGCG-7:1 
LNCipedia gene ID: lnc-SGCG-7
Location (hg38): chr13:22851996-22852852
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 533 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000445646; ENST00000445646.1; RP11-363G2.4-001; OTTHUMT00000044141.1
Alternative gene names: ENSG00000229556; RP11-363G2.4; ENSG00000229556.1; OTTHUMG00000016555.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.6204 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGCG-7:1 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SGCG-7:1
3.1 lnc-SGCG-7:1
4.0 lnc-SGCG-7:1
4.1 lnc-SGCG-7:1
5.0 lnc-SGCG-7:1
5.1 lnc-GTF3A-94:2
5.2 lnc-SGCG-7:1