Transcript: lnc-SGK1-3:10

Basic information

LNCipedia transcript ID: lnc-SGK1-3:10 
LNCipedia gene ID: lnc-SGK1-3
Location (hg38): chr6:134525325-134531006
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 384 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000423028.1; RP11-557H15.4-002; OTTHUMT00000042330.1; NONHSAT115041
Alternative gene names: ENSG00000232310.1; RP11-557H15.4; OTTHUMG00000015620.1; ENSG00000232310.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -284.6523 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGK1-3:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SGK1-2:3
4.0 lnc-SGK1-3:10
4.1 lnc-SGK1-3:10
5.0 lnc-SGK1-3:10
5.1 lnc-OLIG3-65:16
5.2 lnc-SGK1-3:10