Transcript: lnc-SGK1-3:23

Basic information

LNCipedia transcript ID: lnc-SGK1-3:23 
LNCipedia gene ID: lnc-SGK1-3
Ensembl Gene ID: ENSG00000231971
Ensembl Transcript ID: ENST00000422736
Location (hg38): chr6:134447430-134454581
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 568 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422736; ENST00000422736.1; RP11-557H15.3-002; OTTHUMT00000042326.1; NONHSAT147433
Alternative gene names: ENSG00000231971; RP11-557H15.3; ENSG00000231971.1; OTTHUMG00000015617.1; ENSG00000231971.5; AL078590.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.4429 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGK1-3:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SGK1-1:2
3.1 lnc-SGK1-1:2
4.0 lnc-SGK1-1:2
4.1 lnc-SGK1-3:23
5.0 lnc-SGK1-3:23
5.1 lnc-OLIG3-65:23
5.2 lnc-SGK1-3:23