Transcript: lnc-SGK1-3:6

Basic information

LNCipedia transcript ID: lnc-SGK1-3:6 
LNCipedia gene ID: lnc-SGK1-3
RefSeq ID: NR_125856
Location (hg38): chr6:134525318-134540005
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 560 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125856; NR_125856.1
Alternative gene names: LOC101928304


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -176.0178 non-coding 
CPAT coding probability 6.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGK1-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SGK1-3:6
4.0 lnc-SGK1-3:6
4.1 lnc-SGK1-3:6
5.0 lnc-SGK1-3:6
5.1 lnc-OLIG3-65:7
5.2 lnc-SGK1-3:6