Transcript: lnc-SGPL1-1:1

Basic information

LNCipedia transcript ID: lnc-SGPL1-1:1 
LNCipedia gene ID: lnc-SGPL1-1
Ensembl Gene ID: ENSG00000271409
Ensembl Transcript ID: ENST00000603033
Location (hg38): chr10:70929925-70932057
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1963 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017840; ENST00000415746; ENST00000415746.1; RP11-432J9.3-001; OTTHUMT00000048530.1; NONHSAT013866; ENST00000603033.1
Alternative gene names: XLOC_008508; linc-UNC5B-2; ENSG00000237047; RP11-432J9.3; ENSG00000237047.1; OTTHUMG00000018418.1; ENSG00000271409.1; AC073176.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.5052 non-coding 
CPAT coding probability 27.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGPL1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SGPL1-1:1
3.1 lnc-SGPL1-1:1
4.0 lnc-SGPL1-1:1
4.1 lnc-SGPL1-1:1
5.0 lnc-SGPL1-1:1
5.1 lnc-MTRNR2L5-128:1
5.2 lnc-SGPL1-1:1