Transcript: lnc-SGPL1-2:2

Basic information

LNCipedia transcript ID: lnc-SGPL1-2:2 
LNCipedia gene ID: lnc-SGPL1-2
Location (hg38): chr10:70939133-70944142
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 407 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000558852.1; RP11-432J9.6-002; OTTHUMT00000416520.1
Alternative gene names: ENSG00000259267.1; RP11-432J9.6; OTTHUMG00000172020.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.8513 non-coding 
CPAT coding probability 10.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGPL1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SGPL1-2:2
4.0 lnc-SGPL1-2:2
4.1 lnc-SGPL1-2:2
5.0 lnc-SGPL1-2:2
5.1 lnc-MTRNR2L5-129:4
5.2 lnc-SGPL1-2:2