Transcript: lnc-SGPL1-2:4

Basic information

LNCipedia transcript ID: lnc-SGPL1-2:4 
LNCipedia gene ID: lnc-SGPL1-2
Ensembl Gene ID: ENSG00000259267
Ensembl Transcript ID: ENST00000558852
Location (hg38): chr10:70939133-70944144
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 409 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558852.2
Alternative gene names: ENSG00000259267.2; RP11-432J9.6; AC073176.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -23.8513 non-coding 
CPAT coding probability 10.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGPL1-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SGPL1-2:4
4.1 lnc-SGPL1-2:4
5.0 lnc-SGPL1-2:4
5.1 lnc-MTRNR2L5-129:5
5.2 lnc-SGPL1-2:4