Transcript: lnc-SGPL1-2:5

Basic information

LNCipedia transcript ID: lnc-SGPL1-2:5 
LNCipedia gene ID: lnc-SGPL1-2
RefSeq ID: NR_134314
Location (hg38): chr10:70939053-70944144
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 489 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134314.1
Alternative gene names: LOC105378349


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -23.8513 non-coding 
CPAT coding probability 6.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGPL1-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-MTRNR2L5-129:2
5.1 lnc-MTRNR2L5-129:2
5.2 lnc-SGPL1-2:5