Transcript: lnc-SGSH-1:2

Basic information

LNCipedia transcript ID: lnc-SGSH-1:2 
LNCipedia gene ID: lnc-SGSH-1
Ensembl Gene ID: ENSG00000262580
Ensembl Transcript ID: ENST00000576824
Location (hg38): chr17:80201708-80205627
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 820 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000576824.1; RP11-334C17.5-003; OTTHUMT00000437689.1; NONHSAT056356; ENST00000576824.5
Alternative gene names: ENSG00000262580.1; RP11-334C17.5; OTTHUMG00000177568.2; ENSG00000262580.5; AC087741.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.5834 non-coding 
CPAT coding probability 19.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGSH-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SGSH-1:2
4.0 lnc-SGSH-1:2
4.1 lnc-SGSH-1:2
5.0 lnc-SGSH-1:2
5.1 lnc-SGSH-1:2
5.2 lnc-SGSH-1:2