Transcript: lnc-SGSM2-2:3

Basic information

LNCipedia transcript ID: lnc-SGSM2-2:3 
LNCipedia gene ID: lnc-SGSM2-2
Location (hg38): chr17:2402272-2408053
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5782 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000030447.1|HBMT00000586912.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.618 non-coding 
CPAT coding probability 8.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGSM2-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SGSM2-2:3
5.0 lnc-SGSM2-2:3
5.1 lnc-RPA1-27:3
5.2 lnc-SGSM2-2:3