Transcript: lnc-SGTA-4:1

Basic information

LNCipedia transcript ID: lnc-SGTA-4:1 
LNCipedia gene ID: lnc-SGTA-4
Ensembl Gene ID: ENSG00000267063
Ensembl Transcript ID: ENST00000589365
Location (hg38): chr19:2847227-2858716
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 555 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT060466; ENST00000589365.1
Alternative gene names: ENSG00000267063.1; AC006130.3; AC006130.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.08 non-coding 
CPAT coding probability 3.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGTA-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF77-4:1
4.0 lnc-ZNF77-4:1
4.1 lnc-ZNF77-4:1
5.0 lnc-ZNF77-4:1
5.1 lnc-ZNF77-4:1
5.2 lnc-SGTA-4:1